Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 MKNK2P1-201ENST00000437526 628 ntBASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 AC004967.1-201ENST00000453589 447 ntBASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 MIR4469-201ENST00000583919 79 ntBASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SMIM28A0A1B0GU29 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 AC211486.1-202ENST00000416371 468 ntBASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 AC211476.1-201ENST00000503899 468 ntBASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.36■□□□□ 0.53
SMIM28A0A1B0GU29 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 RPS8P6-201ENST00000426177 609 ntBASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SMIM28A0A1B0GU29 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 FRMD8P1-201ENST00000440433 1524 ntBASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms