Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.8■□□□□ 0.92
SLC6A1P30531 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.8■□□□□ 0.92
SLC6A1P30531 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SLC6A1P30531 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
SLC6A1P30531 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SLC6A1P30531 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.79■□□□□ 0.92
SLC6A1P30531 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC6A1P30531 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.78■□□□□ 0.92
SLC6A1P30531 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SLC6A1P30531 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC6A1P30531 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC6A1P30531 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.78■□□□□ 0.92
SLC6A1P30531 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SLC6A1P30531 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC6A1P30531 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.77■□□□□ 0.92
SLC6A1P30531 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SLC6A1P30531 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SLC6A1P30531 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SLC6A1P30531 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC6A1P30531 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC6A1P30531 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SLC6A1P30531 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC6A1P30531 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC6A1P30531 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC6A1P30531 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.76■□□□□ 0.91
SLC6A1P30531 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SLC6A1P30531 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SLC6A1P30531 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SLC6A1P30531 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC6A1P30531 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC6A1P30531 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.75■□□□□ 0.91
SLC6A1P30531 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC6A1P30531 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
SLC6A1P30531 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SLC6A1P30531 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SLC6A1P30531 AC097639.1-201ENST00000565519 1891 ntBASIC20.74■□□□□ 0.91
SLC6A1P30531 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SLC6A1P30531 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SLC6A1P30531 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.74■□□□□ 0.91
SLC6A1P30531 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SLC6A1P30531 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.73■□□□□ 0.91
SLC6A1P30531 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC6A1P30531 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SLC6A1P30531 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC6A1P30531 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.72■□□□□ 0.91
SLC6A1P30531 AC135983.2-203ENST00000454486 1613 ntBASIC20.72■□□□□ 0.91
SLC6A1P30531 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.72■□□□□ 0.91
SLC6A1P30531 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC6A1P30531 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC6A1P30531 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
SLC6A1P30531 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC6A1P30531 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC6A1P30531 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC6A1P30531 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SLC6A1P30531 LINC01124-201ENST00000409786 2117 ntBASIC20.71■□□□□ 0.91
SLC6A1P30531 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC6A1P30531 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC6A1P30531 ABHD17AP4-201ENST00000411545 909 ntBASIC20.71■□□□□ 0.91
SLC6A1P30531 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SLC6A1P30531 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC6A1P30531 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC6A1P30531 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SLC6A1P30531 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC6A1P30531 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC6A1P30531 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC6A1P30531 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC6A1P30531 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.69■□□□□ 0.9
SLC6A1P30531 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC6A1P30531 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SLC6A1P30531 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SLC6A1P30531 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC6A1P30531 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.67■□□□□ 0.9
SLC6A1P30531 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.67■□□□□ 0.9
SLC6A1P30531 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.67■□□□□ 0.9
SLC6A1P30531 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SLC6A1P30531 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A1P30531 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A1P30531 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC6A1P30531 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms