Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV3A0A0B4J244 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
TRAV3A0A0B4J244 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV3A0A0B4J244 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV3A0A0B4J244 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.46■□□□□ 0.71
TRAV3A0A0B4J244 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV3A0A0B4J244 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
TRAV3A0A0B4J244 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV3A0A0B4J244 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV3A0A0B4J244 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TRAV3A0A0B4J244 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV3A0A0B4J244 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.43■□□□□ 0.7
TRAV3A0A0B4J244 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV3A0A0B4J244 MIR3648-2-201ENST00000581792 180 ntBASIC19.42■□□□□ 0.7
TRAV3A0A0B4J244 MIR3648-1-201ENST00000615959 180 ntBASIC19.42■□□□□ 0.7
TRAV3A0A0B4J244 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV3A0A0B4J244 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 AC093323.1-202ENST00000635031 2045 ntBASIC19.41■□□□□ 0.7
TRAV3A0A0B4J244 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV3A0A0B4J244 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.39■□□□□ 0.7
TRAV3A0A0B4J244 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV3A0A0B4J244 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV3A0A0B4J244 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV3A0A0B4J244 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV3A0A0B4J244 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 AC016575.1-201ENST00000607026 382 ntBASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 AC022211.4-201ENST00000625094 2161 ntBASIC19.38■□□□□ 0.69
TRAV3A0A0B4J244 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV3A0A0B4J244 AC142381.3-201ENST00000568208 1670 ntBASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV3A0A0B4J244 AC138932.3-201ENST00000567634 1902 ntBASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.35■□□□□ 0.69
TRAV3A0A0B4J244 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV3A0A0B4J244 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.33■□□□□ 0.69
TRAV3A0A0B4J244 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV3A0A0B4J244 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV3A0A0B4J244 AC126177.7-201ENST00000547904 679 ntBASIC19.33■□□□□ 0.68
TRAV3A0A0B4J244 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms