Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP3Q7Z494 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 MIR6799-201ENST00000620297 69 ntBASIC23.11■■□□□ 1.29
NPHP3Q7Z494 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 NARF-206ENST00000457415 1668 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 FLJ13224-201ENST00000313737 1514 ntBASIC23.11■■□□□ 1.29
NPHP3Q7Z494 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP3Q7Z494 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AC098614.1-201ENST00000368528 745 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AC105233.2-201ENST00000523697 349 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AF228730.5-201ENST00000530288 346 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 API5-211ENST00000534695 560 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AC091167.2-201ENST00000579581 588 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AC003101.2-201ENST00000612557 442 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 WT1-AS_2.1-201ENST00000613208 137 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 SLC22A20-204ENST00000530038 1673 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
NPHP3Q7Z494 AP3S2-216ENST00000617003 1561 ntBASIC23.1■■□□□ 1.29
NPHP3Q7Z494 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 GIMAP3P-201ENST00000495150 836 ntBASIC23.09■■□□□ 1.29
NPHP3Q7Z494 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 AC008738.7-201ENST00000609744 511 ntBASIC23.09■■□□□ 1.29
NPHP3Q7Z494 LINC01451-201ENST00000623792 534 ntBASIC23.09■■□□□ 1.29
NPHP3Q7Z494 RAB34-223ENST00000636154 730 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP3Q7Z494 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 AC009407.1-201ENST00000568958 598 ntBASIC23.08■■□□□ 1.29
NPHP3Q7Z494 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP3Q7Z494 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
NPHP3Q7Z494 WIZP1-201ENST00000531444 2299 ntBASIC23.08■■□□□ 1.28
NPHP3Q7Z494 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms