Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
UBE3BQ7Z3V4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
UBE3BQ7Z3V4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 AC016396.2-201ENST00000562575 1417 ntBASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
UBE3BQ7Z3V4 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
UBE3BQ7Z3V4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 AC116353.5-201ENST00000638148 1699 ntBASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 FAM58CP-201ENST00000435741 640 ntBASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 CROCCP2-202ENST00000412962 2773 ntBASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
UBE3BQ7Z3V4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 BCL2-203ENST00000589955 5011 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 MKNK2P1-201ENST00000437526 628 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 AP006288.1-201ENST00000446065 395 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 AL031432.2-201ENST00000566714 459 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 AL928711.1-201ENST00000570165 459 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 AC091812.2-201ENST00000619081 385 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 REXO1L3P-201ENST00000622202 1288 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 PP12613-201ENST00000424958 2230 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 ELL2P1-201ENST00000413990 1906 ntBASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UBE3BQ7Z3V4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms