Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 AL135999.2-201ENST00000622438 1686 ntBASIC16.88■□□□□ 0.29
PTCHD3Q3KNS1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC022211.2-201ENST00000585075 2527 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 KRT18P67-201ENST00000432816 1264 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 FGFR3P6-201ENST00000457012 610 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AF186996.4-201ENST00000467186 377 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AP001005.1-201ENST00000571755 1248 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AC120114.3-201ENST00000611923 658 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD3Q3KNS1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 RBM17P3-201ENST00000417687 1192 ntBASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ABCD1P5-201ENST00000445663 754 ntBASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD3Q3KNS1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD3Q3KNS1 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms