Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
EPHB3P54753 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.94■□□□□ 0.46
EPHB3P54753 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.94■□□□□ 0.46
EPHB3P54753 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.94■□□□□ 0.46
EPHB3P54753 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.94■□□□□ 0.46
EPHB3P54753 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
EPHB3P54753 AL355385.1-201ENST00000606123 409 ntBASIC17.94■□□□□ 0.46
EPHB3P54753 REXO1L3P-201ENST00000622202 1288 ntBASIC17.94■□□□□ 0.46
EPHB3P54753 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 AL645728.2-201ENST00000641974 660 ntBASIC17.94■□□□□ 0.46
EPHB3P54753 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
EPHB3P54753 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.94■□□□□ 0.46
EPHB3P54753 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.93■□□□□ 0.46
EPHB3P54753 PKD1P1-201ENST00000458669 6805 ntBASIC17.93■□□□□ 0.46
EPHB3P54753 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.93■□□□□ 0.46
EPHB3P54753 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.93■□□□□ 0.46
EPHB3P54753 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
EPHB3P54753 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 AL390961.4-201ENST00000623958 2535 ntBASIC17.93■□□□□ 0.46
EPHB3P54753 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
EPHB3P54753 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.93■□□□□ 0.46
EPHB3P54753 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
EPHB3P54753 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.92■□□□□ 0.46
EPHB3P54753 AC092919.2-201ENST00000623631 1645 ntBASIC17.92■□□□□ 0.46
EPHB3P54753 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 AC002056.1-201ENST00000395613 760 ntBASIC17.92■□□□□ 0.46
EPHB3P54753 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.92■□□□□ 0.46
EPHB3P54753 AC107918.2-201ENST00000530817 355 ntBASIC17.92■□□□□ 0.46
EPHB3P54753 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.92■□□□□ 0.46
EPHB3P54753 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.92■□□□□ 0.46
EPHB3P54753 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.92■□□□□ 0.46
EPHB3P54753 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.92■□□□□ 0.46
EPHB3P54753 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
EPHB3P54753 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
EPHB3P54753 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.91■□□□□ 0.46
EPHB3P54753 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.91■□□□□ 0.46
EPHB3P54753 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.91■□□□□ 0.46
EPHB3P54753 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
EPHB3P54753 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms