Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTCFP49711 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CTCFP49711 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CTCFP49711 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CTCFP49711 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 AC129492.6-201ENST00000611383 1305 ntBASIC19.85■□□□□ 0.77
CTCFP49711 NEFHP1-201ENST00000412845 2629 ntBASIC19.85■□□□□ 0.77
CTCFP49711 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC19.85■□□□□ 0.77
CTCFP49711 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.85■□□□□ 0.77
CTCFP49711 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.85■□□□□ 0.77
CTCFP49711 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.85■□□□□ 0.77
CTCFP49711 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.85■□□□□ 0.77
CTCFP49711 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.85■□□□□ 0.77
CTCFP49711 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.85■□□□□ 0.77
CTCFP49711 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CTCFP49711 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTCFP49711 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CTCFP49711 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC19.84■□□□□ 0.77
CTCFP49711 AC119751.2-201ENST00000504529 210 ntBASIC19.84■□□□□ 0.77
CTCFP49711 STK19B-204ENST00000512515 211 ntBASIC19.84■□□□□ 0.77
CTCFP49711 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC19.84■□□□□ 0.77
CTCFP49711 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CTCFP49711 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CTCFP49711 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CTCFP49711 RN7SL219P-201ENST00000582872 296 ntBASIC19.84■□□□□ 0.77
CTCFP49711 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
CTCFP49711 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CTCFP49711 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.84■□□□□ 0.77
CTCFP49711 CROCCP3-202ENST00000420820 1947 ntBASIC19.84■□□□□ 0.77
CTCFP49711 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.84■□□□□ 0.77
CTCFP49711 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.84■□□□□ 0.77
CTCFP49711 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTCFP49711 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.83■□□□□ 0.77
CTCFP49711 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CTCFP49711 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.83■□□□□ 0.77
CTCFP49711 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CTCFP49711 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.83■□□□□ 0.77
CTCFP49711 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 AC103810.3-201ENST00000583567 96 ntBASIC19.83■□□□□ 0.77
CTCFP49711 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.83■□□□□ 0.77
CTCFP49711 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.83■□□□□ 0.77
CTCFP49711 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTCFP49711 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.83■□□□□ 0.77
CTCFP49711 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTCFP49711 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CTCFP49711 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.83■□□□□ 0.76
CTCFP49711 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTCFP49711 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
CTCFP49711 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.83■□□□□ 0.76
CTCFP49711 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTCFP49711 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CTCFP49711 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.83■□□□□ 0.76
CTCFP49711 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CTCFP49711 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTCFP49711 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTCFP49711 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms