Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A3P25940 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL5A3P25940 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.42■■□□□ 1.02
COL5A3P25940 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A3P25940 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.42■■□□□ 1.02
COL5A3P25940 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.42■■□□□ 1.02
COL5A3P25940 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.42■■□□□ 1.02
COL5A3P25940 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A3P25940 MIR4492-201ENST00000581627 80 ntBASIC21.42■■□□□ 1.02
COL5A3P25940 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.42■■□□□ 1.02
COL5A3P25940 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.42■■□□□ 1.02
COL5A3P25940 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A3P25940 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A3P25940 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
COL5A3P25940 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A3P25940 AL358472.5-202ENST00000641448 1267 ntBASIC21.41■■□□□ 1.02
COL5A3P25940 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL5A3P25940 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL5A3P25940 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A3P25940 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.41■■□□□ 1.02
COL5A3P25940 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A3P25940 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A3P25940 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.41■■□□□ 1.02
COL5A3P25940 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A3P25940 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.41■■□□□ 1.02
COL5A3P25940 AC008738.7-201ENST00000609744 511 ntBASIC21.41■■□□□ 1.02
COL5A3P25940 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.41■■□□□ 1.02
COL5A3P25940 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
COL5A3P25940 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL5A3P25940 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.4■■□□□ 1.02
COL5A3P25940 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.4■■□□□ 1.02
COL5A3P25940 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.4■■□□□ 1.02
COL5A3P25940 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL5A3P25940 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.4■■□□□ 1.02
COL5A3P25940 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL5A3P25940 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.4■■□□□ 1.02
COL5A3P25940 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A3P25940 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A3P25940 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC21.39■■□□□ 1.02
COL5A3P25940 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.39■■□□□ 1.01
COL5A3P25940 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.39■■□□□ 1.01
COL5A3P25940 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC21.39■■□□□ 1.01
COL5A3P25940 AC018529.1-201ENST00000613063 361 ntBASIC21.39■■□□□ 1.01
COL5A3P25940 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A3P25940 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.39■■□□□ 1.01
COL5A3P25940 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms