Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
CDH3P22223 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDH3P22223 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDH3P22223 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDH3P22223 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDH3P22223 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.96■□□□□ 0.3
CDH3P22223 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.96■□□□□ 0.3
CDH3P22223 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.95■□□□□ 0.3
CDH3P22223 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.95■□□□□ 0.3
CDH3P22223 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 AD001527.2-201ENST00000622994 785 ntBASIC16.95■□□□□ 0.3
CDH3P22223 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 HLA-A-201ENST00000376802 1334 ntBASIC16.95■□□□□ 0.3
CDH3P22223 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CDH3P22223 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDH3P22223 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.95■□□□□ 0.3
CDH3P22223 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CDH3P22223 PMPCAP1-201ENST00000508114 1576 ntBASIC16.94■□□□□ 0.3
CDH3P22223 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.94■□□□□ 0.3
CDH3P22223 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 AL645608.8-201ENST00000606034 2086 ntBASIC16.94■□□□□ 0.3
CDH3P22223 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.94■□□□□ 0.3
CDH3P22223 AL031284.1-201ENST00000419297 478 ntBASIC16.94■□□□□ 0.3
CDH3P22223 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 AC093909.1-201ENST00000504731 1122 ntBASIC16.94■□□□□ 0.3
CDH3P22223 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.94■□□□□ 0.3
CDH3P22223 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 NKAPP1-205ENST00000585790 367 ntBASIC16.94■□□□□ 0.3
CDH3P22223 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 AC148477.8-201ENST00000624298 468 ntBASIC16.94■□□□□ 0.3
CDH3P22223 AC073592.5-201ENST00000624854 528 ntBASIC16.94■□□□□ 0.3
CDH3P22223 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CDH3P22223 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDH3P22223 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
CDH3P22223 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CDH3P22223 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDH3P22223 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDH3P22223 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDH3P22223 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms