Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
ERCC3P19447 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 AC134043.2-201ENST00000624206 2238 ntBASIC19.95■□□□□ 0.78
ERCC3P19447 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ERCC3P19447 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
ERCC3P19447 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.95■□□□□ 0.78
ERCC3P19447 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.95■□□□□ 0.78
ERCC3P19447 KRT19P2-202ENST00000557173 1012 ntBASIC19.95■□□□□ 0.78
ERCC3P19447 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
ERCC3P19447 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.95■□□□□ 0.78
ERCC3P19447 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.95■□□□□ 0.78
ERCC3P19447 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ERCC3P19447 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ERCC3P19447 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC3P19447 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
ERCC3P19447 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.95■□□□□ 0.78
ERCC3P19447 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
ERCC3P19447 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC3P19447 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ERCC3P19447 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
ERCC3P19447 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 AC012317.2-201ENST00000623305 2251 ntBASIC19.94■□□□□ 0.78
ERCC3P19447 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.94■□□□□ 0.78
ERCC3P19447 RHOQP3-201ENST00000437982 621 ntBASIC19.94■□□□□ 0.78
ERCC3P19447 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.94■□□□□ 0.78
ERCC3P19447 AL031432.2-201ENST00000566714 459 ntBASIC19.94■□□□□ 0.78
ERCC3P19447 AL928711.1-201ENST00000570165 459 ntBASIC19.94■□□□□ 0.78
ERCC3P19447 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC3P19447 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.94■□□□□ 0.78
ERCC3P19447 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ERCC3P19447 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ERCC3P19447 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.94■□□□□ 0.78
ERCC3P19447 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC3P19447 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC3P19447 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 MYCLP1-201ENST00000372451 1075 ntBASIC19.93■□□□□ 0.78
ERCC3P19447 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ERCC3P19447 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.93■□□□□ 0.78
ERCC3P19447 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.93■□□□□ 0.78
ERCC3P19447 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
ERCC3P19447 LINC02084-201ENST00000606069 1096 ntBASIC19.93■□□□□ 0.78
ERCC3P19447 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.93■□□□□ 0.78
ERCC3P19447 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
ERCC3P19447 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC3P19447 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms