Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 KRT18P27-201ENST00000427733 1299 ntBASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 AC103564.2-201ENST00000432853 1299 ntBASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 RNA5SP416-201ENST00000516838 111 ntBASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.84■□□□□ 0.29
PCDHGA3Q9Y5H0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCDHGA3Q9Y5H0 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
PCDHGA3Q9Y5H0 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCDHGA3Q9Y5H0 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PCDHGA3Q9Y5H0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 GPX1P2-201ENST00000429271 606 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 BX005266.1-201ENST00000473402 457 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 DUTP2-201ENST00000519164 463 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 AL691403.2-201ENST00000618460 490 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 MIR1199-201ENST00000621445 119 ntBASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDHGA3Q9Y5H0 AC080080.1-201ENST00000625121 2420 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 AC022898.2-201ENST00000616822 1312 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 YBX2P1-201ENST00000394192 760 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 RPSAP43-201ENST00000402237 625 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 AC009947.1-201ENST00000444350 727 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 AC135776.1-201ENST00000319817 2481 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 AC018695.7-201ENST00000624587 2492 ntBASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDHGA3Q9Y5H0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA3Q9Y5H0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHGA3Q9Y5H0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms