Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 RNPS1P1-201ENST00000507437 918 ntBASIC16.76■□□□□ 0.27
VPS4AQ9UN37 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4AQ9UN37 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 BX842568.4-201ENST00000421222 227 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 IGHV3-47-201ENST00000425060 335 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 MINOS1P3-201ENST00000457048 203 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AL390719.2-201ENST00000606993 987 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AC124864.1-201ENST00000623408 392 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 BX276092.7-203ENST00000637198 1536 ntBASIC16.75■□□□□ 0.27
VPS4AQ9UN37 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4AQ9UN37 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 AL031284.1-201ENST00000419297 478 ntBASIC16.74■□□□□ 0.27
VPS4AQ9UN37 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 AC112698.1-201ENST00000510299 916 ntBASIC16.74■□□□□ 0.27
VPS4AQ9UN37 POLD2P1-201ENST00000511220 997 ntBASIC16.74■□□□□ 0.27
VPS4AQ9UN37 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4AQ9UN37 AF238378.1-201ENST00000526806 358 ntBASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms