Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 RNA5SP419-201ENST00000515908 135 ntBASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PTCHD1Q96NR3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 AL049840.3-201ENST00000602669 611 ntBASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 AL135999.2-201ENST00000622438 1686 ntBASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 AC141586.5-201ENST00000624546 2050 ntBASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD1Q96NR3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AC006557.2-201ENST00000592985 1240 ntBASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AC008735.5-201ENST00000623544 497 ntBASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD1Q96NR3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms