Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TTC28Q96AY4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TTC28Q96AY4 RPL17P11-201ENST00000417593 544 ntBASIC17.27■□□□□ 0.35
TTC28Q96AY4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.27■□□□□ 0.35
TTC28Q96AY4 SPDYE18-201ENST00000510091 1050 ntBASIC17.27■□□□□ 0.35
TTC28Q96AY4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TTC28Q96AY4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
TTC28Q96AY4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TTC28Q96AY4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
TTC28Q96AY4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
TTC28Q96AY4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
TTC28Q96AY4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 AC009949.1-201ENST00000623048 1830 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 AL035456.1-201ENST00000456064 1369 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 AC114501.2-201ENST00000439631 535 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 RN7SL769P-201ENST00000469386 295 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 BANF1P1-201ENST00000553684 263 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 MTND6P24-201ENST00000440466 518 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 ACTG1P17-201ENST00000558391 1119 ntBASIC17.26■□□□□ 0.35
TTC28Q96AY4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.26■□□□□ 0.35
TTC28Q96AY4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TTC28Q96AY4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 PFN1P12-201ENST00000455938 534 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 AC091046.1-201ENST00000331871 207 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 RNU1-129P-201ENST00000384064 167 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 RPL13AP20-201ENST00000459725 609 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 FAM86HP-204ENST00000513466 959 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 SLC25A47P1-201ENST00000531577 414 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 U1.21-201ENST00000580816 167 ntBASIC17.25■□□□□ 0.35
TTC28Q96AY4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TTC28Q96AY4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TTC28Q96AY4 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 AC114501.1-201ENST00000445949 172 ntBASIC17.24■□□□□ 0.35
TTC28Q96AY4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 MIR3619-201ENST00000579667 83 ntBASIC17.24■□□□□ 0.35
TTC28Q96AY4 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 AC233724.13-201ENST00000598383 410 ntBASIC17.24■□□□□ 0.35
TTC28Q96AY4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 AC009542.2-202ENST00000619004 1067 ntBASIC17.24■□□□□ 0.35
TTC28Q96AY4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
TTC28Q96AY4 AC128714.1-201ENST00000637035 887 ntBASIC17.24■□□□□ 0.35
TTC28Q96AY4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TTC28Q96AY4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms