Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 AC009407.1-201ENST00000568958 598 ntBASIC14.23□□□□□ -0.13
VPS13CQ709C8 MIR4453-201ENST00000584019 89 ntBASIC14.23□□□□□ -0.13
VPS13CQ709C8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 AC129492.6-201ENST00000611383 1305 ntBASIC14.23□□□□□ -0.13
VPS13CQ709C8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 AC005237.2-201ENST00000434368 219 ntBASIC14.23□□□□□ -0.13
VPS13CQ709C8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.23□□□□□ -0.13
VPS13CQ709C8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VPS13CQ709C8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.22□□□□□ -0.13
VPS13CQ709C8 AL358472.5-202ENST00000641448 1267 ntBASIC14.22□□□□□ -0.13
VPS13CQ709C8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 DGCR5-201ENST00000399539 862 ntBASIC14.22□□□□□ -0.13
VPS13CQ709C8 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13CQ709C8 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.22□□□□□ -0.13
VPS13CQ709C8 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
VPS13CQ709C8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 TSSK5P-201ENST00000423978 907 ntBASIC14.21□□□□□ -0.13
VPS13CQ709C8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 KRT17P8-201ENST00000540749 863 ntBASIC14.21□□□□□ -0.13
VPS13CQ709C8 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13CQ709C8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 AC109635.5-201ENST00000533593 962 ntBASIC14.21□□□□□ -0.13
VPS13CQ709C8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS13CQ709C8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13CQ709C8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13CQ709C8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13CQ709C8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
VPS13CQ709C8 FZD10-202ENST00000539839 3282 ntBASIC14.21□□□□□ -0.14
VPS13CQ709C8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13CQ709C8 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13CQ709C8 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.21□□□□□ -0.14
VPS13CQ709C8 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
VPS13CQ709C8 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms