Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.11■□□□□ 0.81
SCN4AP35499 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 AC087499.6-201ENST00000411576 835 ntBASIC20.11■□□□□ 0.81
SCN4AP35499 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.11■□□□□ 0.81
SCN4AP35499 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.11■□□□□ 0.81
SCN4AP35499 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 MIR4259-201ENST00000584466 101 ntBASIC20.11■□□□□ 0.81
SCN4AP35499 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SCN4AP35499 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.11■□□□□ 0.81
SCN4AP35499 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
SCN4AP35499 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.1■□□□□ 0.81
SCN4AP35499 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.1■□□□□ 0.81
SCN4AP35499 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.1■□□□□ 0.81
SCN4AP35499 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.1■□□□□ 0.81
SCN4AP35499 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SCN4AP35499 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SCN4AP35499 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SCN4AP35499 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.1■□□□□ 0.81
SCN4AP35499 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.1■□□□□ 0.81
SCN4AP35499 PRYP6-201ENST00000514804 343 ntBASIC20.1■□□□□ 0.81
SCN4AP35499 AC055876.2-201ENST00000531834 546 ntBASIC20.1■□□□□ 0.81
SCN4AP35499 AC092552.1-201ENST00000547243 906 ntBASIC20.1■□□□□ 0.81
SCN4AP35499 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.1■□□□□ 0.81
SCN4AP35499 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.1■□□□□ 0.81
SCN4AP35499 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.1■□□□□ 0.81
SCN4AP35499 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SCN4AP35499 AL023806.1-201ENST00000603994 1649 ntBASIC20.1■□□□□ 0.81
SCN4AP35499 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.09■□□□□ 0.81
SCN4AP35499 AP000997.3-201ENST00000623333 2250 ntBASIC20.09■□□□□ 0.81
SCN4AP35499 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 COX11-210ENST00000639671 696 ntBASIC20.09■□□□□ 0.81
SCN4AP35499 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.09■□□□□ 0.81
SCN4AP35499 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SCN4AP35499 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SCN4AP35499 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SCN4AP35499 SPDYE19P-201ENST00000338590 713 ntBASIC20.09■□□□□ 0.81
SCN4AP35499 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.09■□□□□ 0.81
SCN4AP35499 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SCN4AP35499 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.09■□□□□ 0.81
SCN4AP35499 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.09■□□□□ 0.81
SCN4AP35499 AL133215.2-201ENST00000609242 977 ntBASIC20.09■□□□□ 0.81
SCN4AP35499 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.09■□□□□ 0.81
SCN4AP35499 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.08■□□□□ 0.81
SCN4AP35499 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.08■□□□□ 0.81
SCN4AP35499 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.08■□□□□ 0.81
SCN4AP35499 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms