Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CTDNEP1O95476 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AP002414.1-201ENST00000391405 1147 ntBASIC19.96■□□□□ 0.79
CTDNEP1O95476 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AL139288.1-201ENST00000623748 933 ntBASIC19.96■□□□□ 0.79
CTDNEP1O95476 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AL022326.1-202ENST00000641533 845 ntBASIC19.96■□□□□ 0.79
CTDNEP1O95476 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CTDNEP1O95476 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CTDNEP1O95476 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.95■□□□□ 0.79
CTDNEP1O95476 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 AC008608.2-201ENST00000606089 416 ntBASIC19.95■□□□□ 0.78
CTDNEP1O95476 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.95■□□□□ 0.78
CTDNEP1O95476 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CTDNEP1O95476 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CTDNEP1O95476 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.94■□□□□ 0.78
CTDNEP1O95476 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms