Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 PHGDH-209ENST00000641074 1780 ntBASIC7.6□□□□□ -1.19
USH2AO75445 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC7.6□□□□□ -1.19
USH2AO75445 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC7.6□□□□□ -1.19
USH2AO75445 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC7.6□□□□□ -1.19
USH2AO75445 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC7.6□□□□□ -1.19
USH2AO75445 AC025048.3-201ENST00000590609 569 ntBASIC7.6□□□□□ -1.19
USH2AO75445 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 AC087499.5-201ENST00000452760 1342 ntBASIC7.6□□□□□ -1.19
USH2AO75445 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC7.6□□□□□ -1.19
USH2AO75445 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC7.6□□□□□ -1.19
USH2AO75445 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
USH2AO75445 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
USH2AO75445 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC7.6□□□□□ -1.19
USH2AO75445 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC7.6□□□□□ -1.19
USH2AO75445 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 STX1A-203ENST00000395155 783 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 MPV17-204ENST00000399052 749 ntTSL 4 BASIC7.6□□□□□ -1.19
USH2AO75445 AL513480.1-201ENST00000451731 511 ntBASIC7.6□□□□□ -1.19
USH2AO75445 RPS2P36-201ENST00000456516 831 ntBASIC7.6□□□□□ -1.19
USH2AO75445 AC104989.1-201ENST00000519711 778 ntBASIC7.6□□□□□ -1.19
USH2AO75445 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC7.6□□□□□ -1.19
USH2AO75445 MIR3615-201ENST00000581999 87 ntBASIC7.6□□□□□ -1.19
USH2AO75445 MIR4706-201ENST00000582134 82 ntBASIC7.6□□□□□ -1.19
USH2AO75445 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC7.6□□□□□ -1.19
USH2AO75445 AC128714.1-201ENST00000637035 887 ntBASIC7.6□□□□□ -1.19
USH2AO75445 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC7.6□□□□□ -1.19
USH2AO75445 FOXO1B-201ENST00000504678 1527 ntBASIC7.6□□□□□ -1.19
USH2AO75445 AC009336.1-201ENST00000608941 1553 ntBASIC7.6□□□□□ -1.19
USH2AO75445 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
USH2AO75445 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC7.6□□□□□ -1.19
USH2AO75445 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC7.59□□□□□ -1.19
USH2AO75445 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC7.59□□□□□ -1.19
USH2AO75445 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC7.59□□□□□ -1.19
USH2AO75445 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC7.59□□□□□ -1.19
USH2AO75445 AC105233.2-201ENST00000523697 349 ntBASIC7.59□□□□□ -1.19
USH2AO75445 AF228730.5-201ENST00000530288 346 ntBASIC7.59□□□□□ -1.19
USH2AO75445 AL079307.3-201ENST00000556114 283 ntBASIC7.59□□□□□ -1.19
USH2AO75445 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC7.59□□□□□ -1.19
USH2AO75445 AL589739.1-201ENST00000607720 493 ntBASIC7.59□□□□□ -1.19
USH2AO75445 RPS24-214ENST00000613865 538 ntTSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 AC009542.2-202ENST00000619004 1067 ntBASIC7.59□□□□□ -1.19
USH2AO75445 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC7.59□□□□□ -1.19
USH2AO75445 COBL-210ENST00000632460 1941 ntTSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 AL161938.1-201ENST00000569833 2180 ntBASIC7.59□□□□□ -1.19
USH2AO75445 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC7.59□□□□□ -1.19
USH2AO75445 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC7.59□□□□□ -1.19
USH2AO75445 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC7.59□□□□□ -1.19
USH2AO75445 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC7.59□□□□□ -1.19
USH2AO75445 AP001889.1-201ENST00000525414 633 ntBASIC7.59□□□□□ -1.19
USH2AO75445 RAB35-202ENST00000534951 939 ntTSL 2 BASIC7.59□□□□□ -1.19
USH2AO75445 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
USH2AO75445 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
USH2AO75445 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
USH2AO75445 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms