Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SNORA72.3-201ENST00000365074 132 ntBASIC23.75■■□□□ 1.39
MSH5O43196 CFTRP3-201ENST00000376400 212 ntBASIC23.75■■□□□ 1.39
MSH5O43196 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC23.75■■□□□ 1.39
MSH5O43196 MTND1P4-201ENST00000435196 415 ntBASIC23.75■■□□□ 1.39
MSH5O43196 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC23.75■■□□□ 1.39
MSH5O43196 AC008770.1-204ENST00000489336 622 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 LDHBP3-201ENST00000514909 822 ntBASIC23.75■■□□□ 1.39
MSH5O43196 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH5O43196 AC021546.1-201ENST00000518927 1031 ntTSL 3 BASIC23.75■■□□□ 1.39
MSH5O43196 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH5O43196 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.75■■□□□ 1.39
MSH5O43196 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 AC243591.1-201ENST00000452967 1364 ntBASIC23.75■■□□□ 1.39
MSH5O43196 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 NSL1-201ENST00000366976 722 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 AC005104.2-201ENST00000427818 678 ntBASIC23.74■■□□□ 1.39
MSH5O43196 COX10-202ENST00000429152 875 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH5O43196 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 AC111000.5-201ENST00000506559 1178 ntBASIC23.74■■□□□ 1.39
MSH5O43196 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH5O43196 FAM192A-206ENST00000564108 1055 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
MSH5O43196 AL139424.1-201ENST00000607572 797 ntBASIC23.74■■□□□ 1.39
MSH5O43196 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
MSH5O43196 AC009269.6-201ENST00000621778 588 ntBASIC23.74■■□□□ 1.39
MSH5O43196 AC009093.7-201ENST00000623853 1223 ntBASIC23.74■■□□□ 1.39
MSH5O43196 LINC00570-201ENST00000417473 1330 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 AL358781.1-202ENST00000321081 1360 ntBASIC23.74■■□□□ 1.39
MSH5O43196 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH5O43196 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
MSH5O43196 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
MSH5O43196 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH5O43196 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 AC012317.2-201ENST00000623305 2251 ntBASIC23.73■■□□□ 1.39
MSH5O43196 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 AC022211.2-201ENST00000585075 2527 ntBASIC23.73■■□□□ 1.39
MSH5O43196 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH5O43196 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH5O43196 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 SNORA40.4-201ENST00000390971 128 ntBASIC23.73■■□□□ 1.39
MSH5O43196 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 AC073143.1-201ENST00000436316 395 ntBASIC23.73■■□□□ 1.39
MSH5O43196 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC23.73■■□□□ 1.39
MSH5O43196 AC091607.1-201ENST00000490318 1060 ntBASIC23.73■■□□□ 1.39
MSH5O43196 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC23.73■■□□□ 1.39
MSH5O43196 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH5O43196 AP005901.3-202ENST00000581653 237 ntBASIC23.73■■□□□ 1.39
MSH5O43196 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 CASC19-208ENST00000641056 1292 ntBASIC23.73■■□□□ 1.39
MSH5O43196 CASC19-227ENST00000641411 1285 ntBASIC23.73■■□□□ 1.39
MSH5O43196 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 AC108860.2-201ENST00000562760 2183 ntBASIC23.73■■□□□ 1.39
MSH5O43196 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC23.73■■□□□ 1.39
MSH5O43196 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH5O43196 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH5O43196 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH5O43196 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
MSH5O43196 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
MSH5O43196 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH5O43196 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
MSH5O43196 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH5O43196 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH5O43196 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH5O43196 BACE2-IT1-201ENST00000433378 382 ntTSL 5 BASIC23.72■■□□□ 1.39
MSH5O43196 HMGN1P19-201ENST00000436976 333 ntBASIC23.72■■□□□ 1.39
MSH5O43196 AL591503.2-201ENST00000442314 1005 ntBASIC23.72■■□□□ 1.39
MSH5O43196 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms