Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AL589739.1-201ENST00000607720 493 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 BOLA2P3-201ENST00000404566 256 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 LDHBP1-201ENST00000455730 1119 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 PHGDH-209ENST00000641074 1780 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 AL353705.2-201ENST00000428243 662 ntBASIC13.21□□□□□ -0.29
COL6A5A8TX70 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 CSF2RBP1-201ENST00000447905 391 ntBASIC13.21□□□□□ -0.29
COL6A5A8TX70 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 AC016027.1-202ENST00000607927 1699 ntBASIC13.21□□□□□ -0.29
COL6A5A8TX70 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A5A8TX70 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC13.21□□□□□ -0.29
COL6A5A8TX70 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A5A8TX70 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A5A8TX70 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A5A8TX70 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A5A8TX70 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 SPCS2P2-201ENST00000603270 608 ntBASIC13.21□□□□□ -0.3
COL6A5A8TX70 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.21□□□□□ -0.3
COL6A5A8TX70 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A5A8TX70 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AL161938.1-201ENST00000569833 2180 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 BX276092.7-203ENST00000637198 1536 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 FAM21FP-201ENST00000426241 1131 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 DOC2GP-202ENST00000514950 1163 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 IGHV3-52-201ENST00000519770 353 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 AC105233.2-201ENST00000523697 349 ntBASIC13.2□□□□□ -0.3
COL6A5A8TX70 AF228730.5-201ENST00000530288 346 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms