Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 GNAS-203ENST00000306120 1878 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 SPCS2P4-201ENST00000436160 681 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 CNN2P2-201ENST00000443536 909 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 CNN2P3-201ENST00000450201 906 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 AC087641.1-201ENST00000557561 1021 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 AL136317.3-201ENST00000618497 906 ntBASIC21.96■■□□□ 1.11
SCN11AQ9UI33 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SCN11AQ9UI33 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
SCN11AQ9UI33 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 AC005237.2-201ENST00000434368 219 ntBASIC21.95■■□□□ 1.1
SCN11AQ9UI33 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 KLF2P3-201ENST00000451977 1087 ntBASIC21.95■■□□□ 1.1
SCN11AQ9UI33 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 AC140878.1-201ENST00000565277 250 ntBASIC21.95■■□□□ 1.1
SCN11AQ9UI33 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SCN11AQ9UI33 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC092580.3-201ENST00000430932 139 ntBASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 LINC00895-201ENST00000629028 1637 ntBASIC21.94■■□□□ 1.1
SCN11AQ9UI33 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 MIR661-201ENST00000384842 89 ntBASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC092474.2-201ENST00000424288 719 ntBASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 AP000842.3-202ENST00000569238 1080 ntBASIC21.94■■□□□ 1.1
SCN11AQ9UI33 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SCN11AQ9UI33 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 AL512356.2-201ENST00000546955 174 ntBASIC21.93■■□□□ 1.1
SCN11AQ9UI33 LINC01225-203ENST00000563550 1244 ntBASIC21.93■■□□□ 1.1
SCN11AQ9UI33 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 MIR4492-201ENST00000581627 80 ntBASIC21.93■■□□□ 1.1
SCN11AQ9UI33 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.93■■□□□ 1.1
SCN11AQ9UI33 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms