Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 AC087163.2-201ENST00000457299 853 ntBASIC18.54■□□□□ 0.56
CNTN3Q9P232 SLC25A6P2-201ENST00000497974 877 ntBASIC18.54■□□□□ 0.56
CNTN3Q9P232 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CNTN3Q9P232 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.54■□□□□ 0.56
CNTN3Q9P232 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC004832.2-201ENST00000426397 482 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC092865.5-201ENST00000545435 363 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC096734.2-201ENST00000562054 433 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC002347.1-201ENST00000569543 541 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC010507.1-201ENST00000633895 436 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 AC116353.5-201ENST00000638148 1699 ntBASIC18.53■□□□□ 0.56
CNTN3Q9P232 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CNTN3Q9P232 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CNTN3Q9P232 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 EGFEM1P-202ENST00000431685 1563 ntBASIC18.52■□□□□ 0.56
CNTN3Q9P232 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 AC023274.1-201ENST00000418278 595 ntBASIC18.52■□□□□ 0.56
CNTN3Q9P232 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 AC018845.2-201ENST00000568326 409 ntBASIC18.52■□□□□ 0.56
CNTN3Q9P232 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 AC006538.3-201ENST00000612495 578 ntBASIC18.52■□□□□ 0.56
CNTN3Q9P232 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CNTN3Q9P232 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CNTN3Q9P232 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.52■□□□□ 0.55
CNTN3Q9P232 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CNTN3Q9P232 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CNTN3Q9P232 AC093525.9-201ENST00000624961 1746 ntBASIC18.52■□□□□ 0.55
CNTN3Q9P232 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 AC139713.2-201ENST00000641328 2723 ntBASIC18.51■□□□□ 0.55
CNTN3Q9P232 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.51■□□□□ 0.55
CNTN3Q9P232 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.51■□□□□ 0.55
CNTN3Q9P232 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CNTN3Q9P232 YBX2P1-201ENST00000394192 760 ntBASIC18.51■□□□□ 0.55
CNTN3Q9P232 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.51■□□□□ 0.55
CNTN3Q9P232 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.51■□□□□ 0.55
CNTN3Q9P232 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.51■□□□□ 0.55
CNTN3Q9P232 RHOQP3-201ENST00000437982 621 ntBASIC18.51■□□□□ 0.55
CNTN3Q9P232 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms