Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 AC079776.4-201ENST00000511039 504 ntBASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 AC008735.5-201ENST00000623544 497 ntBASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AL135999.2-201ENST00000622438 1686 ntBASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AC006557.2-201ENST00000592985 1240 ntBASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM39Q9HCM9 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AL138688.1-201ENST00000624851 1594 ntBASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AC105339.3-201ENST00000560043 636 ntBASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AL049840.3-201ENST00000602669 611 ntBASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 AC004706.3-202ENST00000621574 984 ntBASIC17.15■□□□□ 0.34
TRIM39Q9HCM9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms