Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00477Q96M19 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC125634.1-201ENST00000438758 1403 ntBASIC12.98□□□□□ -0.33
LINC00477Q96M19 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 CD320-202ENST00000537716 1119 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC124947.2-201ENST00000547118 1133 ntBASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AC124864.1-201ENST00000623408 392 ntBASIC12.98□□□□□ -0.33
LINC00477Q96M19 DFFB-212ENST00000625756 649 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
LINC00477Q96M19 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00477Q96M19 AL356309.3-201ENST00000624132 1934 ntBASIC12.98□□□□□ -0.33
LINC00477Q96M19 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 TSPY22P-201ENST00000427496 604 ntBASIC12.97□□□□□ -0.33
LINC00477Q96M19 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CLN6-204ENST00000564752 900 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 IGHV3-41-201ENST00000613121 348 ntBASIC12.97□□□□□ -0.33
LINC00477Q96M19 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC12.97□□□□□ -0.33
LINC00477Q96M19 AC006011.2-201ENST00000621313 1158 ntBASIC12.97□□□□□ -0.33
LINC00477Q96M19 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CLN6-214ENST00000636314 442 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 AL118508.1-201ENST00000613502 2345 ntBASIC12.97□□□□□ -0.33
LINC00477Q96M19 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
LINC00477Q96M19 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00477Q96M19 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms