Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AL139327.4-201ENST00000612362 153 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AL773604.1-201ENST00000617417 272 ntBASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP4CQ96CF2 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 KRT18P67-201ENST00000432816 1264 ntBASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 AF186996.4-201ENST00000467186 377 ntBASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 IGHV3-52-201ENST00000519770 353 ntBASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 SLC25A1P1-201ENST00000528351 927 ntBASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 PRORSD1P-202ENST00000563365 2154 ntBASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4CQ96CF2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AC243591.1-201ENST00000452967 1364 ntBASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AC103564.2-201ENST00000432853 1299 ntBASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AC122714.2-201ENST00000502787 707 ntBASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AC073648.2-201ENST00000510116 352 ntBASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 AL356309.3-201ENST00000624132 1934 ntBASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHMP4CQ96CF2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 MIR7706-201ENST00000613747 67 ntBASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 CROCCP2-202ENST00000412962 2773 ntBASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4CQ96CF2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms