Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SCUBE3Q8IX30 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.2■□□□□ 0.5
SCUBE3Q8IX30 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SCUBE3Q8IX30 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCUBE3Q8IX30 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 SLC25A1P3-201ENST00000395415 828 ntBASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 MRPL3P1-201ENST00000400109 1033 ntBASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 KRT18P67-201ENST00000432816 1264 ntBASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 AF186996.4-201ENST00000467186 377 ntBASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 AL589182.2-201ENST00000619332 1049 ntBASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCUBE3Q8IX30 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 OR6D1P-202ENST00000641007 5290 ntBASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 ACTG1P4-201ENST00000425123 1122 ntBASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 AC009078.2-202ENST00000463353 338 ntBASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SCUBE3Q8IX30 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 NCF1C-201ENST00000438382 1427 ntBASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 AC018712.1-201ENST00000455767 687 ntBASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 AC139887.3-201ENST00000568585 713 ntBASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 AC107918.4-202ENST00000641623 219 ntBASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.17■□□□□ 0.5
SCUBE3Q8IX30 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.16■□□□□ 0.5
SCUBE3Q8IX30 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms