Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 AC018695.7-201ENST00000624587 2492 ntBASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 RPSAP43-201ENST00000402237 625 ntBASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 AC096633.1-201ENST00000422446 749 ntBASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.08■□□□□ 0.81
CCDC144BQ3MJ40 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC144BQ3MJ40 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AL355312.1-201ENST00000407115 2176 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AC007967.2-201ENST00000432613 625 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AC004817.3-201ENST00000602957 2129 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 AL022326.1-202ENST00000641533 845 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 KRT18P55-202ENST00000578578 1546 ntBASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC144BQ3MJ40 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 YBX2P1-201ENST00000394192 760 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 GPX1P2-201ENST00000429271 606 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 AC009947.1-201ENST00000444350 727 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 AC040169.1-201ENST00000565382 521 ntBASIC20.06■□□□□ 0.8
CCDC144BQ3MJ40 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms