Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 HCG4P8-203ENST00000443049 980 ntBASIC18.25■□□□□ 0.51
LIG3P49916 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.25■□□□□ 0.51
LIG3P49916 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.25■□□□□ 0.51
LIG3P49916 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.25■□□□□ 0.51
LIG3P49916 AC092119.3-201ENST00000612618 583 ntBASIC18.25■□□□□ 0.51
LIG3P49916 NPAP1P7-201ENST00000613027 823 ntBASIC18.25■□□□□ 0.51
LIG3P49916 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LIG3P49916 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIG3P49916 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.25■□□□□ 0.51
LIG3P49916 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
LIG3P49916 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
LIG3P49916 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.24■□□□□ 0.51
LIG3P49916 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
LIG3P49916 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.24■□□□□ 0.51
LIG3P49916 CHCHD2P8-201ENST00000429873 447 ntBASIC18.24■□□□□ 0.51
LIG3P49916 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.24■□□□□ 0.51
LIG3P49916 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.24■□□□□ 0.51
LIG3P49916 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.24■□□□□ 0.51
LIG3P49916 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 PCDHB17P-201ENST00000539533 2393 ntBASIC18.24■□□□□ 0.51
LIG3P49916 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.24■□□□□ 0.51
LIG3P49916 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIG3P49916 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.23■□□□□ 0.51
LIG3P49916 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.23■□□□□ 0.51
LIG3P49916 AP002383.4-201ENST00000442518 975 ntBASIC18.23■□□□□ 0.51
LIG3P49916 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 KRT18P56-201ENST00000507275 550 ntBASIC18.23■□□□□ 0.51
LIG3P49916 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.23■□□□□ 0.51
LIG3P49916 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIG3P49916 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.23■□□□□ 0.51
LIG3P49916 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.23■□□□□ 0.51
LIG3P49916 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LIG3P49916 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIG3P49916 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms