Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.24■□□□□ 0.03
CX3CR1P49238 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CX3CR1P49238 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC046185.3-201ENST00000623228 1824 ntBASIC15.24■□□□□ 0.03
CX3CR1P49238 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.24■□□□□ 0.03
CX3CR1P49238 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CR1P49238 AC103564.2-201ENST00000432853 1299 ntBASIC15.23■□□□□ 0.03
CX3CR1P49238 FAM86EP-206ENST00000510506 987 ntBASIC15.23■□□□□ 0.03
CX3CR1P49238 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CR1P49238 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CX3CR1P49238 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CR1P49238 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CX3CR1P49238 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CR1P49238 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CX3CR1P49238 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CX3CR1P49238 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.22■□□□□ 0.03
CX3CR1P49238 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.22■□□□□ 0.03
CX3CR1P49238 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
CX3CR1P49238 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CX3CR1P49238 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.22■□□□□ 0.03
CX3CR1P49238 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.22■□□□□ 0.03
CX3CR1P49238 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.22■□□□□ 0.03
CX3CR1P49238 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 AC009533.2-201ENST00000543664 586 ntBASIC15.22■□□□□ 0.03
CX3CR1P49238 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.22■□□□□ 0.03
CX3CR1P49238 AC087388.1-201ENST00000571370 1112 ntBASIC15.22■□□□□ 0.03
CX3CR1P49238 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.22■□□□□ 0.03
CX3CR1P49238 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CX3CR1P49238 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.22■□□□□ 0.03
CX3CR1P49238 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 AC093525.9-201ENST00000624961 1746 ntBASIC15.22■□□□□ 0.03
CX3CR1P49238 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CX3CR1P49238 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CX3CR1P49238 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CR1P49238 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CX3CR1P49238 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
CX3CR1P49238 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CR1P49238 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms