Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 AC004790.2-201ENST00000623588 572 ntBASIC18.68■□□□□ 0.58
TNFSF9P41273 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TNFSF9P41273 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TNFSF9P41273 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.68■□□□□ 0.58
TNFSF9P41273 PI4KAP1-204ENST00000612579 1703 ntBASIC18.68■□□□□ 0.58
TNFSF9P41273 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.68■□□□□ 0.58
TNFSF9P41273 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFSF9P41273 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TNFSF9P41273 ZNF259P1-201ENST00000407656 1365 ntBASIC18.68■□□□□ 0.58
TNFSF9P41273 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TNFSF9P41273 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 AL645608.8-201ENST00000606034 2086 ntBASIC18.67■□□□□ 0.58
TNFSF9P41273 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.67■□□□□ 0.58
TNFSF9P41273 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.67■□□□□ 0.58
TNFSF9P41273 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.67■□□□□ 0.58
TNFSF9P41273 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.67■□□□□ 0.58
TNFSF9P41273 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.67■□□□□ 0.58
TNFSF9P41273 TERC-201ENST00000602385 541 ntBASIC18.67■□□□□ 0.58
TNFSF9P41273 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.67■□□□□ 0.58
TNFSF9P41273 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TNFSF9P41273 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TNFSF9P41273 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TNFSF9P41273 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TNFSF9P41273 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
TNFSF9P41273 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TNFSF9P41273 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
TNFSF9P41273 MIR940-201ENST00000401276 94 ntBASIC18.66■□□□□ 0.58
TNFSF9P41273 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TNFSF9P41273 AC007967.2-201ENST00000432613 625 ntBASIC18.66■□□□□ 0.58
TNFSF9P41273 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 POLD2P1-201ENST00000511220 997 ntBASIC18.66■□□□□ 0.58
TNFSF9P41273 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.66■□□□□ 0.58
TNFSF9P41273 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 EGFEM1P-202ENST00000431685 1563 ntBASIC18.66■□□□□ 0.58
TNFSF9P41273 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.66■□□□□ 0.58
TNFSF9P41273 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.66■□□□□ 0.58
TNFSF9P41273 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TNFSF9P41273 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TNFSF9P41273 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.65■□□□□ 0.58
TNFSF9P41273 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
TNFSF9P41273 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.65■□□□□ 0.58
TNFSF9P41273 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.65■□□□□ 0.58
TNFSF9P41273 AC140113.2-201ENST00000604370 208 ntBASIC18.65■□□□□ 0.58
TNFSF9P41273 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.65■□□□□ 0.58
TNFSF9P41273 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.65■□□□□ 0.58
TNFSF9P41273 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 AC108860.2-201ENST00000562760 2183 ntBASIC18.65■□□□□ 0.58
TNFSF9P41273 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TNFSF9P41273 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms