Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PGAM5P1-201ENST00000518923 814 ntBASIC18.21■□□□□ 0.51
BDNFP23560 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.21■□□□□ 0.51
BDNFP23560 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.21■□□□□ 0.51
BDNFP23560 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.21■□□□□ 0.51
BDNFP23560 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.21■□□□□ 0.51
BDNFP23560 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 AC064836.3-201ENST00000607928 673 ntBASIC18.21■□□□□ 0.51
BDNFP23560 AC023511.2-201ENST00000618803 211 ntBASIC18.21■□□□□ 0.51
BDNFP23560 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.21■□□□□ 0.51
BDNFP23560 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
BDNFP23560 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.21■□□□□ 0.51
BDNFP23560 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BDNFP23560 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.21■□□□□ 0.5
BDNFP23560 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
BDNFP23560 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
BDNFP23560 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.5
BDNFP23560 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
BDNFP23560 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
BDNFP23560 FZD10-202ENST00000539839 3282 ntBASIC18.2■□□□□ 0.5
BDNFP23560 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
BDNFP23560 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.2■□□□□ 0.5
BDNFP23560 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
BDNFP23560 CRYGEP-201ENST00000412192 528 ntBASIC18.2■□□□□ 0.5
BDNFP23560 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.2■□□□□ 0.5
BDNFP23560 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
BDNFP23560 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
BDNFP23560 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 MRPL20P1-201ENST00000400819 433 ntBASIC18.19■□□□□ 0.5
BDNFP23560 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 VN2R19P-201ENST00000442399 1052 ntBASIC18.19■□□□□ 0.5
BDNFP23560 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 KRT18P2-201ENST00000447938 1258 ntBASIC18.19■□□□□ 0.5
BDNFP23560 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.19■□□□□ 0.5
BDNFP23560 RNA5SP416-201ENST00000516838 111 ntBASIC18.19■□□□□ 0.5
BDNFP23560 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.19■□□□□ 0.5
BDNFP23560 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 GGTLC5P-201ENST00000617623 998 ntBASIC18.19■□□□□ 0.5
BDNFP23560 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BDNFP23560 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.19■□□□□ 0.5
BDNFP23560 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.19■□□□□ 0.5
BDNFP23560 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
BDNFP23560 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 AL138688.1-201ENST00000624851 1594 ntBASIC18.18■□□□□ 0.5
BDNFP23560 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.18■□□□□ 0.5
BDNFP23560 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
BDNFP23560 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms