Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ERCC3P19447 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
ERCC3P19447 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC3P19447 HTR5BP-201ENST00000430851 1154 ntBASIC20.02■□□□□ 0.8
ERCC3P19447 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
ERCC3P19447 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.02■□□□□ 0.8
ERCC3P19447 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.02■□□□□ 0.8
ERCC3P19447 AL078644.1-201ENST00000609881 752 ntBASIC20.02■□□□□ 0.8
ERCC3P19447 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.02■□□□□ 0.8
ERCC3P19447 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.02■□□□□ 0.8
ERCC3P19447 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC3P19447 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC3P19447 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC3P19447 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC3P19447 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ERCC3P19447 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.02■□□□□ 0.79
ERCC3P19447 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.01■□□□□ 0.79
ERCC3P19447 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 MRPL20P1-201ENST00000400819 433 ntBASIC20.01■□□□□ 0.79
ERCC3P19447 METTL21AP1-201ENST00000438852 635 ntBASIC20.01■□□□□ 0.79
ERCC3P19447 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC3P19447 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.01■□□□□ 0.79
ERCC3P19447 AL353135.1-201ENST00000606729 504 ntBASIC20.01■□□□□ 0.79
ERCC3P19447 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.01■□□□□ 0.79
ERCC3P19447 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ERCC3P19447 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
ERCC3P19447 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 CD82-202ENST00000342935 967 ntTSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 AC254562.1-201ENST00000417586 456 ntBASIC20■□□□□ 0.79
ERCC3P19447 LINC00982-205ENST00000420957 435 ntBASIC20■□□□□ 0.79
ERCC3P19447 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20■□□□□ 0.79
ERCC3P19447 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20■□□□□ 0.79
ERCC3P19447 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20■□□□□ 0.79
ERCC3P19447 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ERCC3P19447 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
ERCC3P19447 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.99■□□□□ 0.79
ERCC3P19447 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.99■□□□□ 0.79
ERCC3P19447 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.99■□□□□ 0.79
ERCC3P19447 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC3P19447 AP002414.1-201ENST00000391405 1147 ntBASIC19.99■□□□□ 0.79
ERCC3P19447 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
ERCC3P19447 MKNK2P1-201ENST00000437526 628 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms