Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RNF40O75150 AC106886.4-201ENST00000623557 2502 ntBASIC18.74■□□□□ 0.59
RNF40O75150 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 NSUN5P1-202ENST00000421140 1535 ntBASIC18.74■□□□□ 0.59
RNF40O75150 NSUN5P2-203ENST00000457352 1529 ntBASIC18.74■□□□□ 0.59
RNF40O75150 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
RNF40O75150 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 PHGDH-209ENST00000641074 1780 ntBASIC18.73■□□□□ 0.59
RNF40O75150 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
RNF40O75150 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.73■□□□□ 0.59
RNF40O75150 AKR1C7P-201ENST00000305623 895 ntBASIC18.73■□□□□ 0.59
RNF40O75150 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
RNF40O75150 VENTXP7-201ENST00000475503 772 ntBASIC18.73■□□□□ 0.59
RNF40O75150 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.73■□□□□ 0.59
RNF40O75150 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.73■□□□□ 0.59
RNF40O75150 AP005901.3-202ENST00000581653 237 ntBASIC18.73■□□□□ 0.59
RNF40O75150 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 AC023511.2-201ENST00000618803 211 ntBASIC18.73■□□□□ 0.59
RNF40O75150 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RNF40O75150 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
RNF40O75150 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 AGGF1P2-201ENST00000426656 2106 ntBASIC18.73■□□□□ 0.59
RNF40O75150 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
RNF40O75150 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RNF40O75150 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 AL353692.3-201ENST00000407031 1396 ntBASIC18.72■□□□□ 0.59
RNF40O75150 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
RNF40O75150 NUS1P2-201ENST00000417358 873 ntBASIC18.72■□□□□ 0.59
RNF40O75150 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
RNF40O75150 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.72■□□□□ 0.59
RNF40O75150 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.72■□□□□ 0.59
RNF40O75150 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.72■□□□□ 0.59
RNF40O75150 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.72■□□□□ 0.59
RNF40O75150 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RNF40O75150 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.72■□□□□ 0.59
RNF40O75150 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.71■□□□□ 0.59
RNF40O75150 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RNF40O75150 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 AL355312.1-201ENST00000407115 2176 ntBASIC18.71■□□□□ 0.59
RNF40O75150 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RNF40O75150 AC008741.2-201ENST00000612792 3115 ntBASIC18.71■□□□□ 0.59
RNF40O75150 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.71■□□□□ 0.59
RNF40O75150 AC091607.1-201ENST00000490318 1060 ntBASIC18.71■□□□□ 0.59
RNF40O75150 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.71■□□□□ 0.59
RNF40O75150 AC009065.1-201ENST00000564055 1225 ntBASIC18.71■□□□□ 0.59
RNF40O75150 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms