Protein–RNA interactions for Protein: O60330

PCDHGA12, Protocadherin gamma-A12, humanhuman

Predictions only

Length 932 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA12O60330 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA12O60330 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA12O60330 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 KLF4P1-201ENST00000412782 1185 ntBASIC17.15■□□□□ 0.34
PCDHGA12O60330 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.15■□□□□ 0.34
PCDHGA12O60330 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 CNN2P11-201ENST00000429351 262 ntBASIC17.15■□□□□ 0.34
PCDHGA12O60330 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 GNAS-203ENST00000306120 1878 ntBASIC17.15■□□□□ 0.34
PCDHGA12O60330 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA12O60330 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 SIRPAP1-201ENST00000448467 1770 ntBASIC17.15■□□□□ 0.34
PCDHGA12O60330 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA12O60330 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.14■□□□□ 0.34
PCDHGA12O60330 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
PCDHGA12O60330 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
PCDHGA12O60330 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PCDHGA12O60330 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 ELL2P1-201ENST00000413990 1906 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 PRORSD1P-202ENST00000563365 2154 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA12O60330 AC018845.2-201ENST00000568326 409 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 AC004790.2-201ENST00000623588 572 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 PHGDH-209ENST00000641074 1780 ntBASIC17.14■□□□□ 0.33
PCDHGA12O60330 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA12O60330 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms