Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 BX640515.1-201ENST00000617215 977 ntBASIC16.11■□□□□ 0.17
PRKNO60260 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PRKNO60260 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.11■□□□□ 0.17
PRKNO60260 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.11■□□□□ 0.17
PRKNO60260 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PRKNO60260 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PRKNO60260 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 RPS2P28-201ENST00000314255 741 ntBASIC16.1■□□□□ 0.17
PRKNO60260 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.1■□□□□ 0.17
PRKNO60260 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 AL022342.1-201ENST00000400363 863 ntBASIC16.1■□□□□ 0.17
PRKNO60260 KRT18P27-201ENST00000427733 1299 ntBASIC16.1■□□□□ 0.17
PRKNO60260 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.1■□□□□ 0.17
PRKNO60260 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.1■□□□□ 0.17
PRKNO60260 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.1■□□□□ 0.17
PRKNO60260 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.1■□□□□ 0.17
PRKNO60260 AC093909.1-201ENST00000504731 1122 ntBASIC16.1■□□□□ 0.17
PRKNO60260 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.1■□□□□ 0.17
PRKNO60260 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.1■□□□□ 0.17
PRKNO60260 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.1■□□□□ 0.17
PRKNO60260 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.1■□□□□ 0.17
PRKNO60260 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.1■□□□□ 0.17
PRKNO60260 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PRKNO60260 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PRKNO60260 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PRKNO60260 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PRKNO60260 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PRKNO60260 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
PRKNO60260 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
PRKNO60260 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 AC108860.2-201ENST00000562760 2183 ntBASIC16.09■□□□□ 0.17
PRKNO60260 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.09■□□□□ 0.17
PRKNO60260 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.09■□□□□ 0.17
PRKNO60260 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
PRKNO60260 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.09■□□□□ 0.17
PRKNO60260 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PRKNO60260 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.09■□□□□ 0.17
PRKNO60260 AC073621.1-201ENST00000392730 636 ntBASIC16.09■□□□□ 0.17
PRKNO60260 AC098831.1-202ENST00000438821 336 ntBASIC16.09■□□□□ 0.17
PRKNO60260 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.09■□□□□ 0.17
PRKNO60260 AC105339.3-201ENST00000560043 636 ntBASIC16.09■□□□□ 0.17
PRKNO60260 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PRKNO60260 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.09■□□□□ 0.17
PRKNO60260 AL589182.2-201ENST00000619332 1049 ntBASIC16.09■□□□□ 0.17
PRKNO60260 AC004706.3-202ENST00000621574 984 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms