Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 AC093909.1-201ENST00000504731 1122 ntBASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 FAM215A-202ENST00000632077 792 ntBASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TRIM39Q9HCM9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 LAGE3P1-201ENST00000425356 484 ntBASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 AC139887.3-201ENST00000568585 713 ntBASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 OR6D1P-202ENST00000641007 5290 ntBASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM39Q9HCM9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 FER1L4-210ENST00000615531 5998 ntBASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 AL139384.1-201ENST00000612143 3047 ntBASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 NCF1C-201ENST00000438382 1427 ntBASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 AC097637.2-201ENST00000624096 1997 ntBASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM39Q9HCM9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRIM39Q9HCM9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms