Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF41Q9H4P4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AC116407.3-201ENST00000623905 1129 ntBASIC20.4■□□□□ 0.86
RNF41Q9H4P4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AL805961.1-202ENST00000641562 540 ntBASIC20.4■□□□□ 0.86
RNF41Q9H4P4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 AC005332.8-201ENST00000622750 2735 ntBASIC20.4■□□□□ 0.86
RNF41Q9H4P4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF41Q9H4P4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
RNF41Q9H4P4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
RNF41Q9H4P4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF41Q9H4P4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF41Q9H4P4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.39■□□□□ 0.86
RNF41Q9H4P4 EGFEM1P-202ENST00000431685 1563 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 AP002414.3-201ENST00000589352 1468 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 AC243591.1-201ENST00000452967 1364 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 SLC25A1P3-201ENST00000395415 828 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 AC092910.1-201ENST00000482027 1129 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 AC005593.1-201ENST00000624894 515 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 AC141586.5-201ENST00000624546 2050 ntBASIC20.39■□□□□ 0.85
RNF41Q9H4P4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RNF41Q9H4P4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF41Q9H4P4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF41Q9H4P4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms