Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 REXO1L9P-201ENST00000604264 2108 ntBASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 AL138828.2-201ENST00000615812 383 ntBASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.53■□□□□ 0.88
ZNF541Q9H0D2 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ZNF541Q9H0D2 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 MIR6799-201ENST00000620297 69 ntBASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
ZNF541Q9H0D2 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 TP53TG3HP-202ENST00000569755 579 ntBASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF541Q9H0D2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AL138918.1-201ENST00000568306 659 ntBASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AL139327.4-201ENST00000612362 153 ntBASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
ZNF541Q9H0D2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.49■□□□□ 0.87
ZNF541Q9H0D2 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms