Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
COL12A1Q99715 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL12A1Q99715 AL590787.1-201ENST00000568856 1315 ntBASIC14.96□□□□□ -0.01
COL12A1Q99715 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.96□□□□□ -0.02
COL12A1Q99715 CTBP2P3-201ENST00000585629 1255 ntBASIC14.96□□□□□ -0.02
COL12A1Q99715 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.96□□□□□ -0.02
COL12A1Q99715 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.02
COL12A1Q99715 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.96□□□□□ -0.02
COL12A1Q99715 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL12A1Q99715 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL12A1Q99715 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL12A1Q99715 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL12A1Q99715 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
COL12A1Q99715 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.95□□□□□ -0.02
COL12A1Q99715 TTTY23B-201ENST00000442790 549 ntBASIC14.95□□□□□ -0.02
COL12A1Q99715 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.95□□□□□ -0.02
COL12A1Q99715 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.95□□□□□ -0.02
COL12A1Q99715 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 TEX28P1-201ENST00000613479 1221 ntBASIC14.95□□□□□ -0.02
COL12A1Q99715 TEX28P2-201ENST00000617764 1221 ntBASIC14.95□□□□□ -0.02
COL12A1Q99715 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC14.95□□□□□ -0.02
COL12A1Q99715 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
COL12A1Q99715 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 AL096828.2-201ENST00000567259 1965 ntBASIC14.95□□□□□ -0.02
COL12A1Q99715 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL12A1Q99715 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.95□□□□□ -0.02
COL12A1Q99715 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 FXNP2-201ENST00000411625 547 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 AC107918.2-201ENST00000530817 355 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 MIR1908-201ENST00000410394 80 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 ACTG1P4-201ENST00000425123 1122 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.94□□□□□ -0.02
COL12A1Q99715 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 AL021578.1-201ENST00000613646 709 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC14.94□□□□□ -0.02
COL12A1Q99715 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC14.94□□□□□ -0.02
COL12A1Q99715 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 AC005332.7-201ENST00000614046 2005 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL12A1Q99715 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.94□□□□□ -0.02
COL12A1Q99715 GNAQP1-201ENST00000444815 1067 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 AC099548.2-209ENST00000480264 625 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
COL12A1Q99715 AC004840.1-201ENST00000636359 365 ntBASIC14.94□□□□□ -0.02
COL12A1Q99715 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL12A1Q99715 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.93□□□□□ -0.02
COL12A1Q99715 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL12A1Q99715 WASH6P-202ENST00000359512 1437 ntBASIC14.93□□□□□ -0.02
COL12A1Q99715 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL12A1Q99715 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL12A1Q99715 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL12A1Q99715 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms