Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USP28Q96RU2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.81■□□□□ 0.76
USP28Q96RU2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP28Q96RU2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP28Q96RU2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 PCDHB19P-201ENST00000570871 2371 ntBASIC19.8■□□□□ 0.76
USP28Q96RU2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 INTS4P1-201ENST00000438455 1935 ntBASIC19.8■□□□□ 0.76
USP28Q96RU2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.8■□□□□ 0.76
USP28Q96RU2 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.8■□□□□ 0.76
USP28Q96RU2 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.8■□□□□ 0.76
USP28Q96RU2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
USP28Q96RU2 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.8■□□□□ 0.76
USP28Q96RU2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
USP28Q96RU2 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP28Q96RU2 OR6D1P-202ENST00000641007 5290 ntBASIC19.8■□□□□ 0.76
USP28Q96RU2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.8■□□□□ 0.76
USP28Q96RU2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
USP28Q96RU2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
USP28Q96RU2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 AC003669.1-201ENST00000334569 611 ntBASIC19.79■□□□□ 0.76
USP28Q96RU2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.79■□□□□ 0.76
USP28Q96RU2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.79■□□□□ 0.76
USP28Q96RU2 TOB2P1-201ENST00000469761 992 ntBASIC19.79■□□□□ 0.76
USP28Q96RU2 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.79■□□□□ 0.76
USP28Q96RU2 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.79■□□□□ 0.76
USP28Q96RU2 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 AP002414.4-201ENST00000589764 1148 ntBASIC19.79■□□□□ 0.76
USP28Q96RU2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 AC073592.5-201ENST00000624854 528 ntBASIC19.79■□□□□ 0.76
USP28Q96RU2 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.79■□□□□ 0.76
USP28Q96RU2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP28Q96RU2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.79■□□□□ 0.76
USP28Q96RU2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP28Q96RU2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP28Q96RU2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 NSUN5P1-202ENST00000421140 1535 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 FRMD8P1-201ENST00000440433 1524 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 NSUN5P2-203ENST00000457352 1529 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP28Q96RU2 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USP28Q96RU2 KLF4P1-201ENST00000412782 1185 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 IGHV3-47-201ENST00000425060 335 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 FAM210CP-201ENST00000445714 574 ntBASIC19.78■□□□□ 0.76
USP28Q96RU2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms