Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT28Q7Z3Y7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 AC073592.8-201ENST00000624126 511 ntBASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 FLJ13224-201ENST00000313737 1514 ntBASIC23.18■■□□□ 1.3
KRT28Q7Z3Y7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT28Q7Z3Y7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 MIR6752-201ENST00000618442 71 ntBASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 AL353732.1-201ENST00000569618 1459 ntBASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT28Q7Z3Y7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT28Q7Z3Y7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms