Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
PRKDCP78527 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
PRKDCP78527 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
PRKDCP78527 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PRKDCP78527 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.33□□□□□ -0.44
PRKDCP78527 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 AC105233.2-201ENST00000523697 349 ntBASIC12.33□□□□□ -0.44
PRKDCP78527 AF228730.5-201ENST00000530288 346 ntBASIC12.33□□□□□ -0.44
PRKDCP78527 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.33□□□□□ -0.44
PRKDCP78527 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 KRT8P19-201ENST00000551916 1455 ntBASIC12.33□□□□□ -0.44
PRKDCP78527 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 AC253536.4-201ENST00000440539 267 ntBASIC12.33□□□□□ -0.44
PRKDCP78527 RNA5SP412-201ENST00000516234 123 ntBASIC12.33□□□□□ -0.44
PRKDCP78527 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.33□□□□□ -0.44
PRKDCP78527 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
PRKDCP78527 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC12.33□□□□□ -0.44
PRKDCP78527 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.33□□□□□ -0.44
PRKDCP78527 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC12.33□□□□□ -0.44
PRKDCP78527 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
PRKDCP78527 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PRKDCP78527 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
PRKDCP78527 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 RARRES2P9-201ENST00000565168 469 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 AC005229.1-201ENST00000392885 409 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC104989.1-201ENST00000519711 778 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC105129.2-201ENST00000559536 390 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.32□□□□□ -0.44
PRKDCP78527 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.32□□□□□ -0.44
PRKDCP78527 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 AC007431.3-201ENST00000623221 587 ntBASIC12.32□□□□□ -0.44
PRKDCP78527 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
PRKDCP78527 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
PRKDCP78527 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PRKDCP78527 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC12.31□□□□□ -0.44
PRKDCP78527 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 DOC2GP-202ENST00000514950 1163 ntBASIC12.31□□□□□ -0.44
PRKDCP78527 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
PRKDCP78527 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC12.31□□□□□ -0.44
PRKDCP78527 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC12.31□□□□□ -0.44
PRKDCP78527 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
PRKDCP78527 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms