Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.78■□□□□ 0.28
FOXA1P55317 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.78■□□□□ 0.28
FOXA1P55317 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
FOXA1P55317 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA1P55317 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA1P55317 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
FOXA1P55317 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 PCDH8P1-201ENST00000428983 2773 ntBASIC16.77■□□□□ 0.28
FOXA1P55317 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.77■□□□□ 0.28
FOXA1P55317 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.77■□□□□ 0.28
FOXA1P55317 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.77■□□□□ 0.28
FOXA1P55317 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
FOXA1P55317 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.77■□□□□ 0.28
FOXA1P55317 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA1P55317 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
FOXA1P55317 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 AC132938.5-201ENST00000624980 1813 ntBASIC16.77■□□□□ 0.27
FOXA1P55317 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
FOXA1P55317 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA1P55317 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.76■□□□□ 0.27
FOXA1P55317 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.76■□□□□ 0.27
FOXA1P55317 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
FOXA1P55317 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 AC009336.1-201ENST00000608941 1553 ntBASIC16.76■□□□□ 0.27
FOXA1P55317 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA1P55317 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.76■□□□□ 0.27
FOXA1P55317 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms