Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR574-201ENST00000385209 96 ntBASIC19.79■□□□□ 0.76
SMARCA1P28370 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.79■□□□□ 0.76
SMARCA1P28370 AL591424.1-201ENST00000442569 1213 ntBASIC19.79■□□□□ 0.76
SMARCA1P28370 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.79■□□□□ 0.76
SMARCA1P28370 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.79■□□□□ 0.76
SMARCA1P28370 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.79■□□□□ 0.76
SMARCA1P28370 DUX4L17-201ENST00000557360 1267 ntBASIC19.79■□□□□ 0.76
SMARCA1P28370 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.79■□□□□ 0.76
SMARCA1P28370 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SMARCA1P28370 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCA1P28370 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCA1P28370 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SMARCA1P28370 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMARCA1P28370 AC129492.6-201ENST00000611383 1305 ntBASIC19.78■□□□□ 0.76
SMARCA1P28370 AC138932.1-201ENST00000534164 6830 ntBASIC19.78■□□□□ 0.76
SMARCA1P28370 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.78■□□□□ 0.76
SMARCA1P28370 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCA1P28370 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
SMARCA1P28370 CRYGEP-201ENST00000412192 528 ntBASIC19.78■□□□□ 0.76
SMARCA1P28370 AP000347.1-202ENST00000435868 847 ntBASIC19.78■□□□□ 0.76
SMARCA1P28370 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SMARCA1P28370 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.78■□□□□ 0.76
SMARCA1P28370 FAM197Y3-203ENST00000618346 717 ntBASIC19.78■□□□□ 0.76
SMARCA1P28370 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMARCA1P28370 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SMARCA1P28370 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCA1P28370 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCA1P28370 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.78■□□□□ 0.76
SMARCA1P28370 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.77■□□□□ 0.76
SMARCA1P28370 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCA1P28370 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.77■□□□□ 0.76
SMARCA1P28370 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCA1P28370 HCG4B-203ENST00000450128 991 ntBASIC19.77■□□□□ 0.76
SMARCA1P28370 SLC25A6P2-201ENST00000497974 877 ntBASIC19.77■□□□□ 0.76
SMARCA1P28370 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.77■□□□□ 0.76
SMARCA1P28370 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 AC027601.4-201ENST00000611259 610 ntBASIC19.77■□□□□ 0.76
SMARCA1P28370 REXO1L3P-201ENST00000622202 1288 ntBASIC19.77■□□□□ 0.76
SMARCA1P28370 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
SMARCA1P28370 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCA1P28370 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCA1P28370 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SMARCA1P28370 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMARCA1P28370 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMARCA1P28370 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
SMARCA1P28370 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCA1P28370 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
SMARCA1P28370 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCA1P28370 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 AC002310.6-201ENST00000624451 1377 ntBASIC19.76■□□□□ 0.75
SMARCA1P28370 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
SMARCA1P28370 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SMARCA1P28370 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms