Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL3A1P02461 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL3A1P02461 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL3A1P02461 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL3A1P02461 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
COL3A1P02461 AL513480.1-201ENST00000451731 511 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 AC005412.3-201ENST00000580309 715 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
COL3A1P02461 CITED2-204ENST00000618718 901 ntTSL 2 BASIC22.66■■□□□ 1.22
COL3A1P02461 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
COL3A1P02461 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC22.66■■□□□ 1.22
COL3A1P02461 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
COL3A1P02461 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
COL3A1P02461 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 AC060834.1-201ENST00000443027 2032 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
COL3A1P02461 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC22.66■■□□□ 1.22
COL3A1P02461 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC22.66■■□□□ 1.22
COL3A1P02461 AC091167.2-201ENST00000579581 588 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC22.66■■□□□ 1.22
COL3A1P02461 AC092902.6-201ENST00000641783 218 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 AC108860.2-201ENST00000562760 2183 ntBASIC22.66■■□□□ 1.22
COL3A1P02461 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL3A1P02461 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 AL023806.1-201ENST00000603994 1649 ntBASIC22.65■■□□□ 1.22
COL3A1P02461 TOP3BP1-201ENST00000420768 1380 ntBASIC22.65■■□□□ 1.22
COL3A1P02461 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 HARS-204ENST00000438307 1789 ntTSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC22.65■■□□□ 1.22
COL3A1P02461 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL3A1P02461 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 COA5-202ENST00000409997 557 ntTSL 4 BASIC22.65■■□□□ 1.22
COL3A1P02461 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 AP006288.1-201ENST00000446065 395 ntBASIC22.65■■□□□ 1.22
COL3A1P02461 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 AC112482.1-201ENST00000492080 688 ntBASIC22.65■■□□□ 1.22
COL3A1P02461 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 PUS1-205ENST00000535067 838 ntTSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC22.65■■□□□ 1.22
COL3A1P02461 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.65■■□□□ 1.22
COL3A1P02461 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC22.65■■□□□ 1.22
COL3A1P02461 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL3A1P02461 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC22.64■■□□□ 1.22
COL3A1P02461 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL3A1P02461 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC22.64■■□□□ 1.22
COL3A1P02461 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL3A1P02461 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL3A1P02461 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL3A1P02461 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.64■■□□□ 1.21
COL3A1P02461 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22.64■■□□□ 1.21
COL3A1P02461 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC22.64■■□□□ 1.21
COL3A1P02461 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.64■■□□□ 1.21
COL3A1P02461 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.64■■□□□ 1.21
COL3A1P02461 MTDHP5-201ENST00000598980 586 ntBASIC22.64■■□□□ 1.21
COL3A1P02461 C20orf181-201ENST00000623918 480 ntBASIC22.64■■□□□ 1.21
COL3A1P02461 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC22.64■■□□□ 1.21
COL3A1P02461 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 KRT8P49-201ENST00000604166 1432 ntBASIC22.64■■□□□ 1.21
COL3A1P02461 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC22.64■■□□□ 1.21
COL3A1P02461 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL3A1P02461 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC22.63■■□□□ 1.21
COL3A1P02461 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC22.63■■□□□ 1.21
COL3A1P02461 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
COL3A1P02461 AL121761.2-201ENST00000598007 1648 ntBASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms