Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 IGHV3-52-201ENST00000519770 353 ntBASIC17.42■□□□□ 0.38
VPS39Q96JC1 AC109462.3-201ENST00000573934 613 ntBASIC17.42■□□□□ 0.38
VPS39Q96JC1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 AL592071.1-201ENST00000611956 408 ntBASIC17.42■□□□□ 0.38
VPS39Q96JC1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS39Q96JC1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 FER1L4-210ENST00000615531 5998 ntBASIC17.42■□□□□ 0.38
VPS39Q96JC1 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS39Q96JC1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 LINC02012-201ENST00000608206 1725 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC125634.1-201ENST00000438758 1403 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 DUX4L26-201ENST00000489078 1255 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC090616.6-201ENST00000582640 721 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AL353801.3-201ENST00000609898 542 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 AC093525.9-201ENST00000624961 1746 ntBASIC17.41■□□□□ 0.38
VPS39Q96JC1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS39Q96JC1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS39Q96JC1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 RN7SL850P-201ENST00000579959 291 ntBASIC17.4■□□□□ 0.38
VPS39Q96JC1 AC124864.1-201ENST00000623408 392 ntBASIC17.4■□□□□ 0.38
VPS39Q96JC1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS39Q96JC1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS39Q96JC1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS39Q96JC1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VPS39Q96JC1 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS39Q96JC1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.39■□□□□ 0.37
VPS39Q96JC1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS39Q96JC1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS39Q96JC1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms