Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 AL049812.1-201ENST00000432563 2267 ntBASIC17.37■□□□□ 0.37
TTC28Q96AY4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.37■□□□□ 0.37
TTC28Q96AY4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 AC142381.1-201ENST00000426099 345 ntBASIC17.36■□□□□ 0.37
TTC28Q96AY4 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 MIR8072-201ENST00000614241 80 ntBASIC17.36■□□□□ 0.37
TTC28Q96AY4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 RPL37AP1-201ENST00000412502 279 ntBASIC17.36■□□□□ 0.37
TTC28Q96AY4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TTC28Q96AY4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TTC28Q96AY4 MIR5572-201ENST00000583188 137 ntBASIC17.36■□□□□ 0.37
TTC28Q96AY4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 FAM21FP-201ENST00000426241 1131 ntBASIC17.35■□□□□ 0.37
TTC28Q96AY4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TTC28Q96AY4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TTC28Q96AY4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.35■□□□□ 0.37
TTC28Q96AY4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.35■□□□□ 0.37
TTC28Q96AY4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TTC28Q96AY4 DOC2GP-202ENST00000514950 1163 ntBASIC17.35■□□□□ 0.37
TTC28Q96AY4 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.35■□□□□ 0.37
TTC28Q96AY4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TTC28Q96AY4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TTC28Q96AY4 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TTC28Q96AY4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms