Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AC023274.1-201ENST00000418278 595 ntBASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AL645939.2-201ENST00000427340 991 ntBASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AC005829.1-201ENST00000570002 483 ntBASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AC011467.4-201ENST00000594891 528 ntBASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 AC254562.1-201ENST00000417586 456 ntBASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 LINC00982-205ENST00000420957 435 ntBASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 AC007967.2-201ENST00000432613 625 ntBASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 AC080080.1-201ENST00000625121 2420 ntBASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX2-3Q8TAU0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 ELK2BP-201ENST00000415014 1224 ntBASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 SIGLEC30P-201ENST00000455569 941 ntBASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
NKX2-3Q8TAU0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 MYCLP1-201ENST00000372451 1075 ntBASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AL353135.1-201ENST00000606729 504 ntBASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 AC004706.3-202ENST00000621574 984 ntBASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
NKX2-3Q8TAU0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-3Q8TAU0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-3Q8TAU0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.44■□□□□ 0.86
NKX2-3Q8TAU0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-3Q8TAU0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NKX2-3Q8TAU0 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms