Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.45□□□□□ -0.1
PDLIM3Q53GG5 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 PMS2P2-201ENST00000425039 1128 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 SPDYE13P-201ENST00000445314 798 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AL121912.1-201ENST00000603683 238 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AC016734.2-201ENST00000624325 1377 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AL121761.2-201ENST00000598007 1648 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AC099343.3-201ENST00000605834 2503 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 AC007326.2-201ENST00000624224 7579 ntBASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PDLIM3Q53GG5 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AD000864.1-201ENST00000624076 2295 ntBASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AC027796.2-201ENST00000575326 344 ntBASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AP002414.4-201ENST00000589764 1148 ntBASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 AC080080.1-201ENST00000625121 2420 ntBASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM3Q53GG5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms